Method results

1 Overall

1.1 Plot

1.2 Table

2 Individual metrics

2.1 Overall

2.2 Batch correction

Batch correction

PCR batch

Batch ASW

Graph iLISI

Graph connectivity

kBET

2.3 Bio conservation

Bio conservation

NMI cluster/label

ARI cluster/label

Label ASW

Isolated label F1

Isolated label silhouette

Graph cLISI

HVG conservation

Cell cycle conservation

Trajectory conservation

3 Embeddings

Full

Scaled

Unscaled

mini_pancreas (Embedding)

mini_sim (Embedding)

HVG

Scaled

Unscaled

mini_pancreas (Embedding)

mini_sim (Embedding)